Journal Papers
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Y. Deng, Y. Wang, and Y. Shen, "An Automated diagnostic system of polycystic ovary syndrome based on object growing," Artificial Intelligence in Medicine, October 2010, Accepted for publication.
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C. Lin, G. Hou, Y. Shen, and H. Garcia, "System Integration between Three-Dimensional-Motion Software and Hydraulic Stewart Simulator," Journal of Engineering Technology, pp 44-52, Fall 2009.
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Y. Shen, J. Li, V. Mantena, and S. Jakkula, "Seasonal Adaptation of Vegetation Color in Satellite Images for Flight Simulations," Journal of Intelligent Learning Systems and Applications, vol 1, issue 1, pp 40-52, July 2009.
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J. Yu, Y. Wang, and Y. Shen, "Noise Reduction and Edge Detection via Kernel Anisotropic Diffusion," Pattern Recognition Letters , vol. 29, issue 10, pp 1496-1503, July 2008.
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J. Crouch, Y. Shen, J. Austin, and M. Dinniman, "An Educational Interactive Numerical Model of the Chesapeake Bay," Computer & GeoSciences, Vol. 34, Issue 3, pp 247-258, March 2008.
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J. Yu, Y. Wang, P. Chen, and Y. Shen, "Fetal Abdominal Contour Extraction and Measurement in Ultrasound Images," Ultrasound and Medicine & Biology, vol. 34, issue 2, pp 169-182, February 2008.
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Y. Shen and K. E. Barner, "Fast Adaptive Optimization of Weighted Vector Median Filters,” IEEE Transactions on Signal Processing, vol. 54, no. 7, pp 2497-2510, July 2006.
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Y. Shen and K. E. Barner, "Fuzzy Vector Median Based Surface Smoothing," IEEE Transactions on Visualization and Computer Graphics, vol. 10, no. 3, pp 252-265, May/June 2004.
  Book Chapters
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Y. Shen and M. Martin, "Games and Learning," in Unintended Consequences of Technology: Worldwide Perspectives, Association for Childhood Education International, 2010, Submitted.
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K. E. Barner, Y. Nie, and Y. Shen, "Fuzzy Methods in Nonlinear Signal Processing: Part II – Applications," in Nonlinear Signal and Image Processing: Theory, Methods, and Applications (K. E. Barner and G. R. Arce, eds.), Boca Raton, FL: CRC Press, 2003.
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Y. Shen, "Visualization," in Principles of Modeling and Simulation: Theoretical Underpinnings & Practical Domains (J. Sokolowski and C. Banks, eds), Hoboken, NJ: John Wiley & Sons, Inc., 2010.
  Technical Reports
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J. Sokolowski, R. Mielke, Y. Shen. J. Hanssen, S. Jakkula, and Y. Shen, "Commonwealth Transportation Project," House and Senate Transportation Committees, Virginia General Assembly, 2008.
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M. Robinson, A. Khattak, R. Mielke, Y. Shen, M. Cetin, P. Foytik, S. Jakkula, J. Hanssen, Y. Shen, X. Wang, H. Zhang, and K. Yang, "Hampton Roads Transportation Alternatives Study Final Report," Transportation Subcommittee of Hampton Roads Delegation, Virginia General Assembly, 2008.

  Conference Papers
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D. Banerjee, L. Tran, J. Li, Y. Shen, F. McKenzie, and J. Wang, "Prediction of Brain Tumor Progression Using Multiple Histogram Matched MRI Scans," SPIE Medical Imaging, (Lake Buena Vista, FL), February 2011. Accepted.
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J. Wang and Y. Shen, "Automatic 3D High-Fidelity Traffic Interchange Modeling Using 2D Road GIS Data," IS&T/SPIE Electronic Imaging, 6 pages, (San Francisco, CA), January 2011.  Accepted.
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T. Cuper, Y. Shen, T. Mastaglio, and R. Walker, "Leveraging Game Consoles for the Delivery of TBI Rehabilitation," MODSIM World Conference & Expo 2010, 7 pages, (Hampton, VA), October 2010.
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M. Harper, J. Miller, and Y. Shen, "Digi Island: A Serious Game for Teaching and Learning Digital Circuit Optimization," MODSIM World Conference & Expo 2010, 7 pages, (Hampton, VA), October 2010.
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R. Aras and Y. Shen, "GPU Accelerated Vector Median Filter," MODSIM World Conference & Expo 2010, 8 pages, (Hampton, VA), October 2010.
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J. Wang and Y. Shen, "GIS Data Based Automatic High-Fidelity 3D Road Network Modeling," MODSIM World Conference & Expo 2010, 8 pages, (Hampton, VA), October 2010.
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M. Martin and Y. Shen, "Defining and Leveraging Game Qualities for Serious Games," MODSIM World Conference & Expo 2010, 8 pages, (Hampton, VA), October 2010.
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P. Viswanathan and Y. Shen, "A Software Tool for Visualization of the Cardiac Action Potential in a 2 Dimensional Tissue," 2010 Modeling and Simulation Capstone Conference, 8 pages, (Norfolk, VA), April 2010.
  * R. Aras and Y. Shen, "GPU Accelerated Stylistic Augmented Reality," 2010 Modeling and Simulation Capstone Conference, 8 pages, (Norfolk, VA), April 2010.
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M. Martin and Y. Shen, "Differentiating between Serious Games and Computer Aided Instruction," 2010 Modeling and Simulation Capstone Conference, 8 pages, (Norfolk, VA), April 2010.
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D. Nguyen, Y. Shen, and S. Kadiam, "Tossing Coin Game and Linear Programming Big_M Simplex Algorithms," Global Learn Asia Pacific 2010 - Global Conference on Learning and Technology, (Penang, Malaysia), May 2010.
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Y. Shen, J. Li, A. Chandler, Y. Shen, F. McKenzie, and J. Wang, “Prediction of Brain Tumor Progression using a Machine Learning Technique,” SPIE Medical Imaging, (San Diego, CA), February 2010.
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J. Li, Y. Shen, Y. Shen, R. McKenzie, N. Thakurta, M. Debnam, A. Kumar, and J. Wang, “Brain Tumor Progression Assessment Using Multiple MRI Volumes,” Radiological Society of North America 95th Scientific Assembly and Annual Meeting, (Chicago, IL), December 2009.
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Y. Shen, "Cross-Platform Game Development for Education and Training," MODSIM World Conference & Expo 2009, (Virginia Beach, VA), October 2009.
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S. Manepalli, Y. Shen, H. Garcia, and K. Lawsure, “Virtual VMASC: A 3D Game Environment,” MODSIM World Conference & Expo 2009, (Virginia Beach, VA), October 2009.
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J. Wang, Y. Shen, and A. Khattak, “Visualization of Traffic Accidents,” MODSIM World Conference & Expo 2009, 6 pages, (Virginia Beach, VA), October 2009.
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D. Nguyen, Y. Shen, A Mohammed, and S. Kadiam, “Simple Head-Tail Matching Games for Teaching Linear Programming Simplex Algorithms with Real World Applications,” MODSIM World Conference & Expo 2009, 6 pages, (Virginia Beach, VA), October 2009.
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J. Wang, O Unal, M. Cetin, Y. Shen, and Y. Papelis, “High-Fidelity Roadway Modeling and Simulation,” MODSIM World Conference & Expo 2009, 6 pages, (Virginia Beach, VA), October 2009.
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M. Liu, L. Belfore, Y. Shen, and M. Scerbo, “Uterine Contraction Modeling and Simulation,” MODSIM World Conference & Expo 2009, 6 pages, (Virginia Beach, VA), October 2009.
 
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J. Wang, O. Unal, M. Cetin, Y. Shen, Y. Papelis, "Automatic High-Fidelity Roadway Generation," 2009 Modeling and Simulation Capstone Conference, 6 pages, (Norfolk, VA), April 2009.
 
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Y. Shen, J. Hanssen, Y. Shen, R. Mielke, J. Sokolowski, and M. Robinson, "Freight Trip Generation and Distribution Based on Global Insight Transearch Database," 2009 Modeling and Simulation Capstone Conference, 7 pages, (Norfolk, VA), April 2009.
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Y. Shen, "Teaching Game Development Using Microsoft XNA Game Studio," 2009 Spring Simulation Multiconference (SpringSim'09), (San Diego, CA), March 2009.
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M. Liu and Y. Shen, "Multi-Frame Super-resolution Based on Motion Vector Processing and Kernel Constrained Convex Set Projection," Visual Communications and Image Processing, IS&T/SPIE Electronic Imaging, (San Jose, CA), January 2009.
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Y. Shen, J. Yu, Y. Shen, Y. Wang, "Fetal Skull Auto-Analysis in Ultrasound Images Based on Iterative Randomized Hough Transform," SPIE Medical Imaging, (Lake Buena Vista, FL), January 2009.
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R. Pedada, J. Li, Z. Yue, and Y. Shen, "Parameter Optiimzation for Image Denoising Based on Block Matching and 3D Collaborative Filtering," SPIE Medical Imaging, (Lake Buena Vista, FL), January 2009.
  * J. Wang, Y. Shen, J. DeGroot, Y. Shen, and J. Li, "Using CSF as an Internal QC Tool in DTI Imaging Studies of Brain Tumor?" SPIE Medical Imaging, (Lake Buena Vista, FL), January 2009.
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S. Jakkula, Y. Shen, and J. Sokolowski, "Public Transit Modeling in Cube TP+ and Voyager," MODSIM World Conference & Expo, (Virginia Beach, VA), September 2008.
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J. Wang and Y. Shen, "Modeling and Visualization of Complex Moon Craters," MODSIM World Conference & Expo, (Virginia Beach, VA), September 2008.
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R. Pedada, Y. Shen, J. Li, and K. E. Barner, "Binary-Output Weighted Median Filter for Binary Signals," 2008 International Conference on Image Processing, Computer Vision, and Pattern Recognition (IPCV), (Las Vegas, NV), July 2008
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S. Jakkula, V. Mantena, R. Pedada, Y. Shen, and J. Li, "Seasonal Adaptation of Vegetation Color in Satellite Images," 2008 International Conference on Image Processing, Computer Vision, and Pattern Recognition (IPCV), (Las Vegas, NV), July 2008.
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V. Mantena, R. Pedada, S. Jakkula, Y. Shen, and J. Li, "Vegetation Identification Based on Satellite Imagery," 2008 International Conference on Image Processing, Computer Vision, and Pattern Recognition (IPCV), (Las Vegas, NV), July 2008.
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C. Lin, G. Hou, Y. Shen, and H. Garcia, "Redesign of the Stewart Flight Simulator Platform with Real-Time Sensing and Actuation," 2008 ASEE (American Society for Engineering Education) Annual Conference & Exposition, (Pittsburgh, PA), June 2008.
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M. Liu, Y. Shen, and M. Scerbo, "A Survey of Computerized Fetal Heart Rate Monitoring and Interpretation Techniques," 2008 Modeling and Simulation Capstone Conference, (Norfolk, VA), March 2008.
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Y. Shen, J. Li, Y. Shen, and J. Wang, "MRI Brain Tumor Segmentation Using a Region Growing Method Based on Adaptive Thresholds," 2008 Modeling and Simulation Capstone Conference, (Norfolk, VA), March 2008.
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J. Wang and Y. Shen, "Synthesizing High-resolution Terrains with Craters," 2008 Modeling and Simulation Capstone Conference, (Norfolk, VA), March 2008.
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J. Crouch, C. Weigle, J. Gleason, and Y. Shen, "Polar Stratospheric Cloud Visualization: Volume Reconstruction from Intersecting Curvilinear Cross Sections," Visualization and Data Analysis, (Santa Clara, CA), January 2008.
  * Y. Shen and S. Jakkula, "Aerial Image Enhancement Based on Estimation of Atmospheric Effects," 2007 IEEE International Conference on Image Processing, (San Antonio, Texas), September 2007.
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S. Jakkula, Y. Shen, and J. Sokolowski, "Extraction of Road Network Topology for Transportation and GIS Applications," MODSIM World Conference & Expo, (Virginia Beach, VA), September 2007.
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S. Daugherty and Y. Shen, "Applications of Visualization Software for Mathematics Education," MODSIM World Conference & Expo, (Virginia Beach, VA), September 2007.
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R. Pedada and Y. Shen, "Procedural Modeling of Wound Textures," MODSIM World Conference & Expo, (Virginia Beach, VA), September 2007.
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G. Hou, C. Lin, H. Garcia, and Y. Shen, "Water Craft Simulator: A Prototype," The 10th Multi-Agency Craft Conference (MACC), (Norfolk, VA), June 2007.
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Y. Shen and J. Sokolowski, "Hampton Roads Hurricane Evacuation Arterial Routes Preliminary Study," Business and Industry Symposium, 2007 Spring Simulation Multiconference (SpringSim '07), (Norfolk, Virginia), March 2007.
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Y. Shen, J. Crouch, J. Austin, and M. Dinniman, "Interactive Visualization of Regional Ocean Modeling System," The IASTED International Conference on Graphics and Visualization in Engineering, (Clearwater, Florida), January 2007.
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Y. Shen, J. Seevinck, and E. Baydogan, “Realistic Irrigation Visualization in a Surgical Wound Debridement Simulator,” Medicine Meets Virtual Reality 14, (Long Beach, CA), January 2006.
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L. Belfore, J. Crouch, Y. Shen, S. Girtelschmid, and E. Baydogan, “A Software Framework for Surgical Simulation Virtual Environments,” Medicine Meets Virtual Reality 14, (Long Beach, CA), January 2006.
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J. Seevinck, M. Scerbo, L. Belfore, L. Weireter, J. Crouch, Y. Shen, F. McKenzie, H. Garcia, S. Girtelschmid, E. Baydogan, and E. Schmidt, “A Simulation-Based Training System for Surgical Wound Debridement,” Medicine Meets Virtual Reality 14, (Long Beach, CA), January 2006.
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Y. Shen, “Nonlinear Multivariate Signal Processing: Methods and Applications,” Ph.D. Dissertation, University of Delaware, 2004.
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Y. Shen and K. E. Barner, "Fast Optimization of Weighted Vector Median Filters," in Proceedings of International Conference on Acoustics, Speech, and Signal Processing, (Montreal, Canada), May 2004.
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Y. Shen and K. E. Barner, "Optimization of Fuzzy Vector Median Filters," in Proceedings of the 38th Annual Conference on Information Sciences and Systems, (Princeton, NJ), March 2004.
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Y. Shen and K. E. Barner, "Surface Denoising with Directional Fuzzy Vector Median Filtering," 2003 IEEE International Conference on Multimedia & Expo, (Baltimore, MD), July 2003.
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Y. Shen and K. E. Barner, "Fuzzy Vector Median Based Surface Smoothing in a Haptic Environment", in Proceedings of the 11th Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, (Los Angeles, CA), March 2003.
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Y. Shen and K. E. Barner, "Marginal Fuzzy Median and Fuzzy Vector Median Filtering of Color Images", in Proceedings of the 37th Annual Conference on Information Sciences and Systems, (Baltimore, MD), March 2003.
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Z. Hong, J. Ren, Y. Shen, et al., "FD-RISC32 Design", in Proceedings of the 1st ASIC Design Conference, (Beijing, China), September 1990.
  *  “Techniques for Improving Visualization of Sparsely Sampled Oceanography Models,” IEEE Computer Graphics and Applications. In preparation.
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“Utilizing U.S. Geological Survey Digital Data Sets in Computer Graphics and Visualization Instruction,” IEEE Transactions on Education. In preparation.